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Detailed information on CNT30672620


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT001751, E-value = 7e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503993Setaria viridisNicotiana attenuata35.6781.4588.39224forward
CNT3053016Setaria viridisAmborella trichopoda47.6132.4384.62299forward

Expression of CNT30672620

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

Sequence

>CNT30672620
AGGCACTTGCATTGAACAATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAGACC
GAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCA
GAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCC
AACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTC
ACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAG
CAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCAATCTGCCCAGGGTGGAGGAGACTTCCTTAACAATCTCATCATAGCGGGCCTTG
GAGTACTTGGGAGTGGTGGCATCCATCT