Detailed information on CNT30672611


BLAST search results

BLAST vs Swiss-Prot:
sp|P46518|LEA14_GOSHI, E-value = 5e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693862Setaria viridisOryza sativa15.5129.2993.187forward
CNT30435628Setaria viridisAegilops tauschii30.4843.2987.72171forward
CNT30131205Setaria viridisLolium perenne33.5126.2686.7188forward
CNT30351852Setaria viridisEragrostis tef20.6830.1391.38116forward
CNT30367723Setaria viridisSorghum bicolor32.2631.9886.19181forward

Expression of CNT30672611

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSLMVGSLNSPLVESGMVNLPTMGRSMVSPTWSS*

>peptide 2 (88 aa)
MLTLLCRVMHSRLMLLKETLSSDASGLGMCAILSTTNSLALSIRLCFCFGSACSLAMANLALRLSLGLWIAVVAATAKRGRMAGKFLQM

Sequence

>CNT30672611
GTTGAGCTGACAGCTGATACAATGCAGTAGCATTAGCTCGCCTCTGATGGGGTGCGACTGAACAGCATGTCCTTGATGGTTGGGAGCTTGAACTCGCCGC
TGGTGGAGAGCGGGATGGTGAACTTGCCGACGATGGGGAGGTCGATGGTGAGCCCCACCTGGAGCTCGTAGTCGATGTCCCAGTCCCTGCCCACGTCCTT
GACGATCGAGATCAGGAAGTCGTAGGGCACCTTGGCCGGGATCTCCAGCTTGGTGACCTCGCAGATGGGGAGGCGGTGGTCGTAGGGGTTGGAGATGTTG
ACGTTGCTGTGCAGGGTGATGCACTCGCGGCTCATGCTCTTGAAGGAGACGCTGTCCAGCGACGCCTCCGGCTTGGGGATGTGCGCGATCTTGTCCACCA
CGAACTCCTTGGCCTTATCCATCAGGCTCTGCTTCTGCTTCGGCTCCGCGTGCTCGCTCGCCATGGCAAACCTTGCTCTTCGACTCTCTCTTGGATTATG
GATCGCGGTGGTTGCAGCAACGGCCAAACGCGGCAGGATGGCTGGGAAATTTCTGCAGATG