Detailed information on CNT30672592


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6I544|GL52_ORYSJ, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618191Setaria viridisSesamum indicum46.8510.3285.07134forward
CNT30552278Setaria viridisOryza glaberrima34.6211.2286.8799forward
CNT30339207Setaria viridisEragrostis tef22.7330.6687.6965forward
CNT30595500Setaria viridisOryza meridionalis34.6215.5287.8899forward
CNT30369486Setaria viridisOryza glumipatula34.6211.1986.8799forward
CNT3099889Setaria viridisOryza rufipogon34.6214.0686.8799forward
CNT30574671Setaria viridisOryza barthii34.6210.8886.8799forward

Expression of CNT30672592

Peptides detected in this lncRNA

>peptide 1 (54 aa)
TRPRGKTKTSPAVIVFAISLFPVVMKPTSRVPCRTKTISVARGWVCGGFRPPGA*

>peptide 2 (57 aa)
QAAGEDEDVAGSDSLRNQLVPGGYEAHIQGALQDEDNLGGARVGVRRVQATGGVIYA*

Sequence

>CNT30672592
ACCAGGCCGCGGGGGAAGACGAAGACGTCGCCGGCAGTGATAGTCTTCGCAATCAGCTTGTTCCCGGTGGTTATGAAGCCCACATCCAGGGTGCCCTGCA
GGACGAAGACAATCTCGGTGGCGCGAGGGTGGGTGTGCGGCGGGTTCAGGCCACCGGGGGCGTAATCTATGCGTGACAGCGACACGCCGAGGGTGTTGTT
GGTGTTACCGGGATTGGCGAGGCCTTTGAAGTAGAAGTCGTCCTCTGTCACGGTGGCCTTGCAGGGAAATCCGTTCACCTTCATGG