Detailed information on CNT30672589


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 3e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180337Setaria viridisSecale cereale33.6718.7782.16269forward
CNT30555545Setaria viridisOryza glaberrima31.5430.4785.71252forward
CNT306440Setaria viridisZea mays33.2922.2484.96266forward
CNT30685379Setaria viridisTriticum urartu19.423.3887.1155forward
CNT30371468Setaria viridisOryza glumipatula30.9121.4684.62247forward
CNT30151009Setaria viridisBrachypodium distachyon38.9260.7482.64311forward
CNT30578501Setaria viridisOryza barthii31.5422.4685.71252forward
CNT30585439Setaria viridisEchinochloa crusgalli30.2938.2387.6242forward

Expression of CNT30672589

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

>peptide 2 (67 aa)
MNNVTARIPVSRSIDYITCMHLILPPLLTKPVLLMRRLTGSPAVDLSPWNGATEVAEEAITVGAMAY*

Sequence

>CNT30672589
ACATGTTTAGCAAGCCAATGGTAGCATTGCTCATGGGCACGCATGCTCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCG
GTGTTGAACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCGCCGCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCAC
CTGCTTGATGTTGTCGAAGCCGATGACACGGATGTAACAGTCAGGGTAGGCCTTCTTGCACTCCTCGAGCTCAGCGTACACCTGGGTGGCCTCGGTGCAG
CCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGCCCGTCGTAGTAACAGGGAGACCTGCTGTTCTCACGAAAGACGAACCCGACCTTGCTGAACTCGA
GGCAGGGGATCCAGTTGTTCCGGATCAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACACCTGAGCAACGACACTCTCATATCAGTTCCTAAACTT
CCTATTGAGTTGTATTATTTATATGAACAACGTAACAGCAAGAATTCCAGTGTCTAGATCGATCGATTATATTACCTGCATGCACCTGATCCTTCCGCCG
TTGCTGACGAAGCCGGTGCTACTGATGCGGCGGCTGACGGGGAGTCCGGCGGTGGACTTGAGCCCCTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCA
TCACGGTCGGCGCCATGGCTTACTAGCTAGTGCTAGTATACGCTTACTAGTACTGTATTTACGAAGGAGAAGAAGAGGCAGTCTTGCTTGAGAGGCTCC