Detailed information on CNT30672574


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521178Setaria viridisSetaria italica66.7278.3299.48383forward
CNT30555782Setaria viridisOryza glaberrima24.7435.6890.85142forward
CNT30129105Setaria viridisCorymbia citriodora11.3223.7292.3165forward
CNT30578457Setaria viridisOryza barthii24.7425.0492.96142forward
CNT30118059Setaria viridisOryza nivara13.2425.9492.1176forward

Expression of CNT30672574

Peptides detected in this lncRNA

>peptide 1 (50 aa)
WLPDNFLAQRSLIRAVTHLRVADETLQTSTRFYNTSTRETLPQNHQIHED*

>peptide 2 (36 aa)
MKHCRHPLGFTIQVHGKLCLKTTKFTKTNTGMSRVR*

>peptide 3 (34 aa)
MQRRMQPIFENQGQGQGWAHQTESMKHQLPSTQQ*

>peptide 4 (69 aa)
MSLAAETMLVRAGLTSVYLPAGKLLLTRSRVWHIQSRKGGLKFCVCSGECSQFLRIKVKDKGGLIKLNP*

Sequence

>CNT30672574
TGGCTTCCAGACAATTTTCTTGCCCAAAGATCATTAATACGAGCCGTAACACACCTCAGAGTTGCAGATGAAACACTGCAGACATCCACTCGGTTTTACA
ATACAAGTACACGGGAAACTTTGCCTCAAAACCACCAAATTCACGAAGACTAACACAGGTATGAGCAGGGTGCGATAATCGTGCCAAGAAAAATACTAAT
CTAACCCACAGACGAGCGGATACACGGTCCATATTATTCAAGACAAATGGCTTCTTTGATGGCACCCTCCTTGTAATTAAACGAAAAGCCACTGCAGGGA
CGGTTCTCACTTGGCGCTGGCGAGCTGGGTGCGGATGAGCTTGGCGGCAGAGACCATGTTGGTTAGGGCGGGCTTGACCTCCGTGTACTTGCCAGCCGGG
AAACTACTCTTGACAAGATCAAGAGTCTGGCACATTCAATCCAGAAAGGGCGGACTCAAGTTCTGTGTATGCAGCGGAGAATGCAGCCAATTTTTGAGAA
TCAAGGTCAAGGACAAGGGTGGGCTCATCAAACTGAATCCATGAAGCACCAGCTGCCTTCAACTCAGCAATGAC