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Detailed information on CNT30672571


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 4e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512691Setaria viridisJuglans regia41.6710.7884175forward
CNT30592159Setaria viridisMusa acuminata30.4839.5186.72128forward
CNT30511330Setaria viridisSolanum lycopersicum25.4826.2389.72107forward
CNT30555589Setaria viridisOryza glaberrima79.7619.288.36335forward
CNT30441013Setaria viridisAegilops tauschii32.3837.8895.59136forward
CNT30652852Setaria viridisRosa chinensis25.4826.8891.59107forward
CNT30624277Setaria viridisDaucus carota42.6237.6184.36179forward
CNT30721746Setaria viridisTriticum spelta79.5220.7788.92334forward
CNT30367313Setaria viridisSorghum bicolor48.8136.0997.56205forward
CNT30646445Setaria viridisCannabis sativa50.4861.4581.6212forward
CNT3054135Setaria viridisAmborella trichopoda42.6229.4986.03179forward
CNT3024196Setaria viridisPopulus trichocarpa21.920.2688.0492forward
CNT30322486Setaria viridisAsparagus officinalis39.0534.9788.41164forward
CNT30151099Setaria viridisBrachypodium distachyon47.8652.3496.52201forward
CNT30104395Setaria viridisOryza rufipogon48.140.8984.16202forward
CNT30725998Setaria viridisLupinus angustifolius38.5777.1486.42162forward

Expression of CNT30672571

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLHGVHGHTTHLRPAVPLHTVLVVGVTSLQHGLLSPASTSNLTNHGTAAAGDNLLGA

>peptide 2 (52 aa)
LTQRFTIVPGHTSILEHMSFNHLAAEIDKQRYDNSNSKWPCRTWQQWLQPGP*

>peptide 3 (33 aa)
MCWWLPPPWGCSTGFMATPRTLGQQFLFTRYLW*

Sequence

>CNT30672571
CTGACACAACGGTTCACCATAGTACCAGGCCACACATCCATACTGGAACACATGTCCTTCAACCATCTAGCGGCGGAGATAGATAAACAAAGATACGACA
ACAGTAACTCTAAGTGGCCTTGTCGGACTTGGCAGCAGTGGCTGCAGCCTGGCCCCTGAGACGACCGGTCCTCCTGGCAGCGATGAGACCAACCTTCTGG
CCGGGGGGTGCGTGACCAATGTGCTGGTGGTTACCTCCTCCGTGGGGATGCTCCACGGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTCCTCT
TCACACGGTACTTGTGGTAGGCGTTACCAGCCTTCAGCATGGGCTTCTCAGTCCTGCCTCCACCAGCAACCTGACCAATCATGGCACGGCAGCTGCTGGG
GACAATCTTCTTGGCGCCAG