Detailed information on CNT30672556


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393881Setaria viridisTriticum turgidum59.748.8889.34197forward
CNT30587002Setaria viridisMusa acuminata31.5238.5287.5104forward
CNT30596728Setaria viridisOryza meridionalis67.8846.1991.07224forward
CNT30371441Setaria viridisOryza glumipatula67.8854.991.96224forward
CNT30151232Setaria viridisBrachypodium distachyon68.4818.6593.81226forward
CNT30578506Setaria viridisOryza barthii67.8814.0991.96224forward
CNT30117442Setaria viridisOryza nivara66.3653.8192.24219forward

Expression of CNT30672556

Peptides detected in this lncRNA

>peptide 1 (52 aa)
LTQRFTIVPGHTSILEHMSFNHLAAEIDKQRYDNSNSKWPCRTWQQWLQPGP*

>peptide 2 (33 aa)
MRPTFWPGGASRRTVEALPAFSMGFSVLPPPAT*

Sequence

>CNT30672556
CTGACACAACGGTTCACCATAGTACCAGGCCACACATCCATACTGGAACACATGTCCTTCAACCATCTAGCGGCGGAGATAGATAAACAAAGATACGACA
ACAGTAACTCTAAGTGGCCTTGTCGGACTTGGCAGCAGTGGCTGCAGCCTGGCCCCTGAGACGACCGGTCCTCCTGGCAGCGATGAGACCAACCTTCTGG
CCGGGGGGTGCGTCACGGCGGACAGTGGAGGCGTTACCAGCCTTCAGCATGGGCTTCTCAGTCCTGCCTCCACCAGCAACCTGACCAATCATGGCACGGC
AGCTGCTGGGGACAATCTTCTTGGCGCCAG