Detailed information on CNT30672548


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 8e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30292923Setaria viridisTriticum aestivum32.4489.9192.68205forward
CNT30390478Setaria viridisTriticum turgidum46.8424.8390.54296forward
CNT30247486Setaria viridisAvena sativa71.9976.3492.97455forward
CNT30683149Setaria viridisTriticum urartu38.9255.5391.06246forward
CNT30344811Setaria viridisEragrostis tef57.7565.394.52365forward
CNT30319122Setaria viridisAsparagus officinalis32.1213.7383.74203forward
CNT30582414Setaria viridisEchinochloa crusgalli64.7269.0991.44409forward
CNT30556995Setaria viridisPanicum hallii46.8442.1197.64296forward

Expression of CNT30672548

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSEATPYMVRQTLRMVTSPAAPRAPAWPCTGVLRSGPVRAKGPTRR*

Sequence

>CNT30672548
ACAAATACAACACCTAGTCATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTT
ATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGC
ACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCCGAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGG
CCTCCTTCTTGCGGCCGGTGAGCGTGAGCGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGTGACGAGCCCGGCGGCGCCCAGGGCGCCCGC
CTGGCCGTGCACGGGCGTGTTGCGGAGCGGGCCGGTGAGGGCGAAGGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGC
GGGCTCACGGCGGTGCGGTAGGCCGGGAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTCTCCAGGCTGCCGATGAAGGGGTCGC
CGTTGATGGGCTGCACCACCTGGTACGTTGTC