Detailed information on CNT30672513


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224666Setaria viridisHordeum vulgare13.524.3288.8954forward
CNT30555664Setaria viridisOryza glaberrima14.2525.7992.9857forward
CNT30367300Setaria viridisSorghum bicolor28.2525.0686.73113forward
CNT30597166Setaria viridisOryza meridionalis14.2520.2191.2357forward
CNT30105511Setaria viridisOryza longistaminata15.524.888.7162forward
CNT30104583Setaria viridisOryza rufipogon14.2526.8991.2357forward
CNT30578474Setaria viridisOryza barthii14.2528.591.2357forward
CNT30604899Setaria viridisOryza punctata14.2524.4692.9857forward

Expression of CNT30672513

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKHCRHPLGFTIQVHGKLCLKTTKFTKTNTGMSRVR*

>peptide 2 (45 aa)
FLAQRSLIRAVTHLRVADETLQTSTRFYNTSTRETLPQNHQIHED*

Sequence

>CNT30672513
TTTCTTGCCCAAAGATCATTAATACGAGCCGTAACACACCTCAGAGTTGCAGATGAAACACTGCAGACATCCACTCGGTTTTACAATACAAGTACACGGG
AAACTTTGCCTCAAAACCACCAAATTCACGAAGACTAACACAGGTATGAGCAGGGTGCGATAATCGTGCCAAGAAAAATACTAATCTAACCCACAGACGA
GCGGATACACGGTCCATATTATTCAAGACAAATGGCTTCTTTGATGGCACCCTCCTTGTAATTAAACGAAAAGCCACTGCAGGGACGGTTCTCACTTGGC
GCTGGCGAGCTGGGTACTTGCCAGCCGGGAAACTACTCTTGACAAGATCAAGAGTCTGGGCTCCACGAACAAGGTCAAAACCATAAGCAGTAACACCGCT