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Detailed information on CNT30672509


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186769Setaria viridisSecale cereale36.9334.1783.08260forward

Expression of CNT30672509

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MVAHAGAEESQYLSFLFGGAGLLALLELSVHLGGLGAAEHGQLPHGPVAPVVVTGRPAVLTKDEPDLAELEAGDPVVPDQVLDLLQELVG*

>peptide 2 (37 aa)
MHAMDTAEASKEKKNKIKVTRSKKKNEQTLHGCPCRS*

Sequence

>CNT30672509
TTAGACAAAAACACCAGTAATTAACCATGATCTAGTATTGTCGGCGGATTGGCAGGGTATGCTCTAGTATCCATATTACATATCATAGCCGGAGCTAGCA
TTCACATGTTCCTCACCCAACGATCGATAGTTGTATAGTAGCTAGTCCTATGTAGATAACTCTCCGGTTGGGGGGAGAGATCCGCATGCATGCCATGGAT
ACAGCAGAAGCAAGCAAGGAAAAAAAAAACAAAATCAAGGTGACACGAAGCAAAAAAAAAAACGAACAGACACTTCATGGTTGCCCATGCAGGAGCTGAA
GAGTCTCAGTATTTAAGCTTTTTATTTGGCGGCGCCGGCCTTCTTGCACTCCTCGAGCTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACATGGGC
AGCTTCCACATGGTCCAGTAGCGCCCGTCGTAGTAACAGGGAGACCTGCTGTTCTCACGAAAGACGAACCCGACCTTGCTGAACTCGAGGCAGGGGATCC
AGTTGTTCCGGATCAGGTACTCGACCTGCTTCAGGAGCTGGTCGGTTGAGAGAGTCCGGCGGTGGACTTGAGCCCCTGGAATGGAGCCACGGAGGTGGCC
GAGGAGGCCATCACGGTCGGCGCCATGGCTTACTAGCTAGTGCTAGTATACGCTTACTAGTACTGTATTTACGAAGGAGAAGAAGAGGCAGTCTTGCTTG
AGAG