CANTATAdb - search

Detailed information on CNT30672503

BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 4e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30520862	Setaria viridis	Setaria italica	99.78	99.78	97.81	915	forward
CNT30287468	Setaria viridis	Triticum aestivum	36.42	77.31	82.63	334	forward
CNT30386515	Setaria viridis	Triticum turgidum	39.26	26.01	81.67	360	forward
CNT30436411	Setaria viridis	Aegilops tauschii	39.26	54.63	82.22	360	forward
CNT30658347	Setaria viridis	Triticum dicoccoides	36.42	61.85	82.93	334	forward
CNT30681645	Setaria viridis	Triticum urartu	39.26	24.61	81.94	360	forward

Expression of CNT30672503

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MNNVTARIPVSRSIDYITCMHLILPPLLTKPVLLMRRLTGSPAVDLSPWNGATEVAEEAITVGAMAY*

>peptide 2 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

Sequence

>CNT30672503
ATGAATATGATCGCTGTGTATACATTCGTGTAAATATATCACTATGTGCAAAGGTATAGCCGGAGCTATGTACCATGCATTCACATGTTTAGCAAGCCAA
TGGTAGCATTGCTCATGGGCACGCATGCTCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGAACTGAGACGGA
CAGGTATTTAAGCTTTTTATTTGGCGCCGCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACAGGACGCATTGCACCTGCCTGAGGTTGTCGAA
GCCGATGACACGGATGTAACAGTCAGGGTAGGCCTTCTTGCACTCCTCGAGCTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACATGGGCAGCTTC
CACATGGTCCAGTAGCGCCCGTCGTAGTAACAGGGAGACCTGCTGTTCTCACGAAAGACGAACCCGACCTTGCTGAACTCGAGGCAGGGGATCCAGTTGT
TCCGGATCAGGTACTCGACCTGCTTCAGGAGCTGGTCGGTTGAGAGAGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACAC
CTGAGCAACGACACTCTCATATCAGTTCCTAAACTTCCTATTGAGTTGTATTATTTATATGAACAACGTAACAGCAAGAATTCCAGTGTCTAGATCGATC
GATTATATTACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGAAGCCGGTGCTACTGATGCGGCGGCTGACGGGGAGTCCGGCGGTGGACTTGAGCC
CCTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTCGGCGCCATGGCTTACTAGCTAGTGCTAGTATACGCTTACTAGTACTGTATTTACGA
AGGAGAAGAAGAGGCAG