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Detailed information on CNT30672500


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 8e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555769Setaria viridisOryza glaberrima63.6648.2492.68205forward
CNT30440702Setaria viridisAegilops tauschii48.1446.9794.84155forward
CNT30689646Setaria viridisTriticum urartu48.1453.8294.19155forward
CNT30721908Setaria viridisTriticum spelta48.1448.994.84155forward
CNT30361575Setaria viridisSorghum bicolor49.0724.7389.24158forward
CNT30597233Setaria viridisOryza meridionalis63.0455.1692.12203forward
CNT30104304Setaria viridisOryza rufipogon63.6657.9193.66205forward
CNT30578403Setaria viridisOryza barthii63.6657.7593.66205forward
CNT30118019Setaria viridisOryza nivara63.6658.2492.2205forward

Expression of CNT30672500

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSSALGQRRAWRWCQGPGHSRRRCCWGCT*

>peptide 2 (32 aa)
LNTSSLKILNLLLDCKSNLVAGTVALPLAIEK*

>peptide 3 (36 aa)
MYLIPASAICFQMLALRSVARQWATIRVAGGGEQRSS

Sequence

>CNT30672500
ACCTGAATACCAGCAGCCTCAAGATCCTCAACCTCCTTCTTGATTGCAAGAGCAATCTGGTAGCAGGGACAGTGGCATTGCCCCTAGCCATCGAGAAGTA
GGTGTCAAACCCAATCTCTCCTCCGGTCCATGAGTAGCGCTCTGGGACAGCGCCGAGCATGGCGGTGGTGTCAAGGACCTGGTCATAGTAGGAGAAGGTG
TTGCTGGGGATGTACTTGATCCCAGCATCAGCCATCTGCTTCCAGATGCTGGCCCTGAGGTCGGTGGCGCGGCAGTGGGCGACGATAAGGGTAGCGGGGG
GAGGAGAGCAGAGGAGCAGCAC