Detailed information on CNT30672484


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402985Setaria viridisBeta vulgaris32.335.4184125forward
CNT30300179Setaria viridisTriticum aestivum56.3318.6887.16218forward
CNT30311864Setaria viridisCamelina sativa36.9529.5581.82143forward
CNT3062430Setaria viridisArabidopsis lyrata56.3318.9179.36218forward

Expression of CNT30672484

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MPPWLLSTMTFPSESTSTMAARALASSDFPTPVGPAKIKLAIGLLGFLRPTRARRMERLIATTASSWPMTRLCKVSSILRSLSDSSLETFSTGMPVHD

Sequence

>CNT30672484
ATATGATTATGTGTTTGAAACGAAAACTCAACTATTTTGTCATCTGTTATGTACGATCTAAACCGTGACTGCCGGAGTTGGGAGCTCCGGTATGCCACCC
TGGCTGTTGAGCACGATGACCTTCCCCTCTGAGTCAACATCCACAATGGCAGCAAGGGCCTTAGCGAGCTCTGACTTCCCAACACCGGTGGGACCTGCGA
AGATAAAGCTTGCAATCGGCCTGTTGGGGTTCTTGAGGCCCACACGAGCACGGCGAATGGAACGACTAATAGCTACCACAGCCTCATCTTGGCCAATGAC
ACGTTTGTGCAAAGTCTCTTCCATCTTAAGAAGCTTATCAGATTCATCACTGGAAACCTTCTCCACTGGAATGCCAGTCCATGACGA