Detailed information on CNT30672456


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521002Setaria viridisSetaria italica77.3275.6199.71341reverse complement
CNT30220487Setaria viridisHordeum vulgare77.163.4395340forward
CNT30366518Setaria viridisSorghum bicolor59.8681.4897.73264forward
CNT30318721Setaria viridisAsparagus officinalis17.0130.2486.6775reverse complement

Expression of CNT30672456

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGSSPRLFLLRRMSQQHKTRVSLVIGLDQTSHDTS*

Sequence

>CNT30672456
CGCCCAGGGGGCATCGTCGTCGGGGACAGGCTTCGATTTCTATAGTATTTAGATATAGAGATAGATGATGATAGAGATCTAGATCTTTCTATAGATAGAT
CCTTAGCCTAACCAAACCTCCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCGTGGGTCTTGAGTTCGGCAAGACGACTTCGGTTCACACG
TGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCAC
TCGGCTCCTCTCCTCGGCTATTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACAC
GAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTA