Detailed information on CNT30672419


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693708Setaria viridisOryza sativa44.2231.3991.28172forward
CNT30435258Setaria viridisAegilops tauschii38.5652.8283.33150forward
CNT30657122Setaria viridisTriticum dicoccoides39.0729.0683.55152forward
CNT30130810Setaria viridisLolium perenne38.8229.1584.11151forward
CNT30679781Setaria viridisTriticum urartu44.7325.9382.18174forward
CNT30720193Setaria viridisTriticum spelta38.5627.4783.33150forward
CNT30338878Setaria viridisEragrostis tef42.9321.4192.22167forward
CNT30101676Setaria viridisOryza rufipogon38.5635.3891.33150forward
CNT30582819Setaria viridisEchinochloa crusgalli35.2216.4197.08137forward
CNT30116867Setaria viridisOryza nivara21.0834.0292.6882forward

Expression of CNT30672419

Peptides detected in this lncRNA

>peptide 1 (49 aa)
HACCRTPTIYIRTLVDNKADRLYEARSTNFNCICRSTISTSIKRGRDPW*

>peptide 2 (41 aa)
MHVVAPQLSIYELWLITKPTGCTRHAAPILIVYAGVQYQHR*

>peptide 3 (38 aa)
MPEYNINIDKKRQRSMVMIGASSTSKASRRMEEDRRSN*

Sequence

>CNT30672419
CATGCATGTTGTCGCACCCCAACTATCTATATACGAACTTTGGTTGATAACAAAGCCGACAGGCTGTACGAGGCACGCAGCACCAATTTTAATTGTATAT
GCCGGAGTACAATATCAACATCGATAAAAAGAGGCAGAGATCCATGGTGATGATCGGAGCTAGCAGTACAAGCAAAGCTAGTAGGCGAATGGAGGAGGAT
CGGAGGAGCAACTGAACTTAGATCTTGCCGCGCGGGCCCGGCACCGGCGGCTGCTGCGGCCCCTTCTTGATCGGCAGGAGGTCCGGCGACGCCGACGCGC
TGACGTAGGCCAGCAGGGATCCGCCGCCCAGCAGCAGGAACTTGAGCAGCAGGCCCCTCTTGGTGAACGGCCCCGCGAACGTCTCGAAG