Detailed information on CNT30672414


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698134Setaria viridisQuercus lobata23.677.6282.39142forward
CNT30712288Setaria viridisGlycine max23.6724.6185.21142forward
CNT3042792Setaria viridisPrunus dulcis2439.0282.64144forward
CNT3084834Setaria viridisVigna radiata17.8327.7985.98107forward
CNT30483616Setaria viridisChara braunii17.332682.69104forward
CNT3027985Setaria viridisTheobroma cacao23.1725.682.73139forward
CNT30104607Setaria viridisOryza rufipogon1830.0895.37108forward
CNT3040359Setaria viridisMarchantia polymorpha21.1716.9682.68127forward

Expression of CNT30672414

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSRGRLVSAAPERPLGLECTKPLFITWLAMGAYAVAISTSACLSRTGLFLPAKW*

Sequence

>CNT30672414
ACAAATACAACACCTAGTCATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTT
ATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGC
ACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCCGAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGG
CCTCCTTCTTGCGGCCGGTGAGCCGGGGCCGCCTGGTCAGCGCAGCGCCTGAAAGGCCCCTGGGCCTCGAGTGCACCAAGCCGCTCTTCATCACCTGGCT
CGCCATGGGAGCGTACGCGGTAGCCATCTCGACCTCTGCCTGTCTCTCACGAACAGGGCTCTTCCTTCCTGCAAAATGGTAGAAGAGGTCTCCTTGTATC
GGCCCAATTAAAGTTTGTGATCTTTAGATCCTGCAGGGGGTGTGTGAGAAGATCTGTGGCGTGTTTGGATGGATGGGGCCCTGCAGCTGAGATATGGCTC