Detailed information on CNT30672391


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 7e-50

BLAST vs NONCODE:
NONBNAT001751, E-value = 1e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30483069Setaria viridisChara braunii77.7322.3384.38192forward

Expression of CNT30672391

Peptides detected in this lncRNA

>peptide 1 (79 aa)
LREGLHHHGLRGNHLHHTSITVLQELGLLLKLLTGSPVDLGNELSKLDSYVGGVAVQHWGVAVADLPRVVHDDDLGGEA*

>peptide 2 (41 aa)
TQRRSPPPWASWESSSPYQHHRSSGTWAPSQAPYRIACRSW*

>peptide 3 (60 aa)
SEKVSTTMGFVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

Sequence

>CNT30672391
ACTCAGAGAAGGTCTCCACCACCATGGGCTTCGTGGGAATCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTT
ACCGGATCGCCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCTATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGC
CCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTTGAACCGCT