Detailed information on CNT30672379


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520774Setaria viridisSetaria italica103.7941.4296.35466forward
CNT30182270Setaria viridisSecale cereale73.7259.9687.01331forward
CNT30294278Setaria viridisTriticum aestivum70.3873.3288.61316forward
CNT30222663Setaria viridisHordeum vulgare57.4650.9987.98258forward
CNT304588Setaria viridisZea mays72.3825.1993.85325forward

Expression of CNT30672379

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LHPSKKSTVQVPSYLKYIYTRAHCSINDLIAYPCTHTHVERTST*

>peptide 2 (84 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSVAVRKPDLDAAEQRAHGGAVGREVGEVPGDERAGGDGRLQAADEGVAVDGLHHL

Sequence

>CNT30672379
ACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTTATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCA
TGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCC
GAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGCGTAGCCGTGCGCAAG
CCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGGAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTC
TCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGGT