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Detailed information on CNT30672378


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520764Setaria viridisSetaria italica76.0798.2199.83604forward
CNT30535656Setaria viridisEucalyptus grandis23.4337.281.72186forward
CNT30464658Setaria viridisSaccharum spontaneum24.4321.1683.51194forward

Expression of CNT30672378

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

Sequence

>CNT30672378
ATGATCATTTACGTAAGTAAAACAACCATGTTATAATGTTCCAACGAATTGGCAATCTAGTGGTACATTGTCGTATGAATATGATCGCTGTGTATACATT
CGTGTAAATATATCACTATGTGCAAAGGTATAGCCGGAGCTATGTACCATGCATTCACATGTTTAGCAAGCCAATGGTAGCATTGCTCATGGGCACGCAT
GCTCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGAACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCG
CCGCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTGATGTTGTCGAAGCCGATGATACGGATGTAACAGTCGG
GGTAGGCCTTCTTGCACTCCTCGAACTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGCCCGTCGTA
GTAACAGGGAGACGTGCTGTTCTCACGATAGACGAACCCGATCTTGCTGAACTCAAGGCAGGGGATCCAGTTCTTCCGGATCAGGTAGTCGATCTGCTTC
AGGACCTCGTCCGTGGAGAGAGCGGCGGCTCACGGGGAGTCCGGCGGTGGACTTGAGCCCCTGGAATGGAGCAACTGAGGTGGCCGAGGAGGCCATCACG
GTCGGCGCCATGGCTTACTAGCTAGTGCTAGTATACGCTTACTAGTACTGTATTTACGAAGGAGAAGAAGAGGCAGTCTTGCTTGAGAGGCTCC