CANTATAdb - search

Detailed information on CNT30672311

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30441097	Setaria viridis	Aegilops tauschii	50.51	57.98	91.59	345	forward
CNT30250195	Setaria viridis	Avena sativa	50.51	53.74	88.41	345	forward

Expression of CNT30672311

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LTTREQNHYYCTNIILVYNADSSSRLAPEMQRETRHACGSSLAASTNPRTPLPAGRQWSCRGEWRA*

>peptide 2 (43 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

>peptide 3 (48 aa)
MRQLACSINQSTYAPPGRKTMELQRRMASLVAGDEVGGRPGSRAGPCR*

>peptide 4 (30 aa)
MVMRPSPKEPTLMGVPAMVEEIAMVEAAIA*

Sequence

>CNT30672311
TTAACCACCAGGGAACAAAACCACTACTATTGCACAAACATCATCTTAGTGTACAACGCCGACTCATCATCTCGACTTGCCCCTGAAATGCAACGTGAAA
CAAGACACGCATGCGGCAGCTCGCTTGCAGCATCAACCAATCCACGTACGCCCCTCCCGGCCGGAAGACAATGGAGTTGCAGAGGCGAATGGCGAGCTTA
GTTGCCGGGGACGAAGTTGGTGGTCGGCCAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAG
GCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCAGGGTCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCG
ACGACCTCGCCGAGTGGGCCGCCGGCAATGCGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGC
CGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATGGTGGAGGA
GATCGCCATGGTGGAGGCAGCCATTGCGTGAGGCGAGAGAGTGTGCTGGACCAGTCGGTAGCTGCTGCTGATGGGTGAAGGTG