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Detailed information on CNT30672249


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30140865Setaria viridisLolium perenne37.0237.7190.05201forward

Expression of CNT30672249

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRQLACSINQSTYAPPGRKTMELQRRMASLVAGDEVGGRPGSRAGPCR*

>peptide 2 (61 aa)
QNHYYCTNIILVYNADSSSRLAPEMQRETRHACGSSLAASTNPRTPLPAGRQWSCRGEWRA*

>peptide 3 (43 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30672249
CAAAACCACTACTATTGCACAAACATCATCTTAGTGTACAACGCCGACTCATCATCTCGACTTGCCCCTGAAATGCAACGTGAAACAAGACACGCATGCG
GCAGCTCGCTTGCAGCATCAACCAATCCACGTACGCCCCTCCCGGCCGGAAGACAATGGAGTTGCAGAGGCGAATGGCGAGCTTAGTTGCCGGGGACGAA
GTTGGTGGTCGGCCAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAG
CTCCTTGACCTTGAGCTCGGCGAAGGCCTCAGGGTCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGT
GGGCCGCCGGCAATGCGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGAGATCGCCATGGTGGAGGCAGCCATTGCGTGAGGCGA
GAGAGTGTGCTGGACCAGTCGGTAGCTGCTGCTGATGGGTGAA