Detailed information on CNT30672247


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221016Setaria viridisHordeum vulgare25.8921.6494.35124forward
CNT30386449Setaria viridisTriticum turgidum25.0524.2992.5120forward
CNT30362957Setaria viridisSorghum bicolor27.9716.994.78134forward

Expression of CNT30672247

Peptides detected in this lncRNA

>peptide 1 (93 aa)
RCNAYMTISKRLILLLSSAEARQLFHISFQDLHAPAPAGVVACVGMRQLMDQLFSSMAGSSSAGCLPRTTSRARSRCRRGRRRATCRRGARRS*

>peptide 2 (62 aa)
MLFTLRHPVRHRRSVPRRRDAAVTAAVTLTTTVKVHLSFLFGVPGSFLKQLAASTCVVVLVCD

Sequence

>CNT30672247
ACAGATGCAACGCATACATGACCATAAGTAAGCGCTTGATCCTGCTTTTGTCTAGTGCCGAGGCTAGACAATTATTCCATATATCATTTCAAGATCTCCA
TGCTCCTGCTCCTGCAGGCGTAGTAGCGTGCGTAGGGATGAGGCAGCTGATGGATCAGTTGTTCAGTAGTATGGCTGGATCTTCCAGCGCTGGTTGTCTC
CCTCGCACCACTTCCAGAGCACGATCTCGGTGCCGTCGCGGACGCCGCCGTGCCACTTGTCGCCGTGGAGCGCGTCGAAGTTGAGGTAGATGTTGTTCAC
CCTGCGACATCCCGTACGGCACCGGCGGAGCGTACCCCGGCGTCGCGATGCCGCCGTAACCGCCGCCGTAACGCTCACGACCACCGTAAAAGTCCATCTC
TCTTTTCTCTTTGGTGTGCCTGGTTCTTTTCTTAAGCAGCTAGCAGCAAGCACTTGTGTTGTGGTTCTTGTTTGTGATT