Detailed information on CNT30672119


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520588Setaria viridisSetaria italica76.2842.8999.48193forward
CNT30225148Setaria viridisHordeum vulgare17.392290.9144forward
CNT30396188Setaria viridisTriticum turgidum20.9518.5388.6853forward
CNT30555775Setaria viridisOryza glaberrima21.748.6690.9155forward
CNT30666691Setaria viridisTriticum dicoccoides20.9520.5488.6853forward
CNT30686830Setaria viridisTriticum urartu20.9518.0988.6853forward
CNT30722252Setaria viridisTriticum spelta20.9516.9988.6853forward
CNT30351418Setaria viridisEragrostis tef21.749.790.9155forward
CNT30320390Setaria viridisAsparagus officinalis26.094.3187.8866forward
CNT30118009Setaria viridisOryza nivara21.7418.7787.2755forward

Expression of CNT30672119

Peptides detected in this lncRNA

>peptide 1 (73 aa)
TGTHNLPTRRQNLGESRTHYYTSTSDTSSTRNGHHHRKHGSQGSSPRRRPRPWRCLRQPSWGAAARYSSTAAR*

Sequence

>CNT30672119
ACAGGCACACACAACCTCCCTACTAGAAGGCAAAACCTAGGCGAGTCTAGAACGCACTACTACACAAGCACAAGTGATACATCATCCACAAGAAACGGCC
ACCACCACCGGAAGCACGGTAGTCAGGGATCTAGTCCTCGTCGCCGGCCGCGGCCTTGGCGCTGCCTCCGCCAGCCTTCTTGGGGAGCAGCAGCCAGATA
CTCGAGCACAGCGGCGAGGTAGACGGGTGCGCCGGCGCCGACCCTCTCGGCGT