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Detailed information on CNT30672063


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 3e-75

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Setaria viridisOryza sativa44.7727.4790.91231forward
CNT30520246Setaria viridisSetaria italica65.8936.1796.47340forward
CNT30289434Setaria viridisTriticum aestivum44.7739.992.21231forward
CNT30554471Setaria viridisOryza glaberrima44.7741.9290.91231forward
CNT30436341Setaria viridisAegilops tauschii34.8859.2191.67180forward
CNT30681546Setaria viridisTriticum urartu39.7393.6192.2205forward
CNT30340854Setaria viridisEragrostis tef27.3361.8497.16141forward
CNT30596591Setaria viridisOryza meridionalis44.7749.0489.61231forward
CNT30370727Setaria viridisOryza glumipatula41.8641.392.13216forward
CNT30148227Setaria viridisBrachypodium distachyon32.5666.6789.29168forward
CNT30102628Setaria viridisOryza rufipogon44.7718.290.91231forward
CNT30577068Setaria viridisOryza barthii42.4446.992.24219forward
CNT30496422Setaria viridisDigitaria exilis44.1936.9594.74228forward
CNT30117165Setaria viridisOryza nivara44.1950.8990.79228forward
CNT30604388Setaria viridisOryza punctata30.2346.9994.23156forward
CNT30556802Setaria viridisPanicum hallii68.640.0594.92354forward
CNT30551356Setaria viridisOryza brachyantha30.4345.3892.99157forward

Expression of CNT30672063

Peptides detected in this lncRNA

>peptide 1 (93 aa)
RCNAYMTISKRLILLLSSAEARQLFHISFQDLHAPAPAGVVACVGMRQLMDQLFSSMAGSSSAGCLPRTTSRARSRCRRGRRRATCRRGARRS*

>peptide 2 (29 aa)
MASPVTLLTRAKAGMPSSSLTLVLKRMSLY

Sequence

>CNT30672063
ACAGATGCAACGCATACATGACCATAAGTAAGCGCTTGATCCTGCTTTTGTCTAGTGCCGAGGCTAGACAATTATTCCATATATCATTTCAAGATCTCCA
TGCTCCTGCTCCTGCAGGCGTAGTAGCGTGCGTAGGGATGAGGCAGCTGATGGATCAGTTGTTCAGTAGTATGGCTGGATCTTCCAGCGCTGGTTGTCTC
CCTCGCACCACTTCCAGAGCACGATCTCGGTGCCGTCGCGGACGCCGCCGTGCCACTTGTCGCCGTGGAGCGCGTCGAAGTTGAGGTAGATGTTGTTCAC
CATGCGGACGCAGCGGAAGCCGTCGCCGACGTCGCGGCTCTCGGTCCAGAGCACCGACTCGTCCTGGTAGTCCGGGTTGTAGGGGACCAGCTTGACGGAG
TGGCCCTGCCCCGTGGAGTGCTTGATGGCCTCGCCGGTGACCTTGTTGACGAGGGCGAAGGCCGGCATGCCTTCCTCGTCCTTGACCCTGGTGCTGAAGC
GCATGTCCTTGTACCA