CANTATAdb - search

Detailed information on CNT30672021

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 4e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30658727	Setaria viridis	Triticum dicoccoides	23.32	22.54	86.54	156	forward
CNT30721365	Setaria viridis	Triticum spelta	19.13	52.03	92.19	128	forward
CNT30341741	Setaria viridis	Eragrostis tef	33.48	36.96	90.62	224	forward
CNT30596665	Setaria viridis	Oryza meridionalis	24.07	33.68	87.58	161	forward

Expression of CNT30672021

Peptides detected in this lncRNA

>peptide 1 (51 aa)
GMQMHIHSVEQRRRDDTELWRRKSKESQKDRTTMQDQIEATPPQYRSLLTW*

>peptide 2 (79 aa)
MIQSCGAGNRKKARRIAPQCRIRSRLLLHNTGHSSHGEALRPGSQKGQDTSHTVTDSLTQIQLRNPRLQHNTRFIQSLQ*

Sequence

>CNT30672021
GGAATGCAGATGCATATTCATTCAGTAGAACAAAGGAGACGAGATGATACAGAGTTGTGGCGCCGGAAATCGAAAGAAAGCCAGAAGGATCGCACCACAA
TGCAGGATCAGATCGAGGCTACTCCTCCACAATACAGGTCACTCCTCACATGGTGAGGCACTAAGGCCAGGCTCACAGAAGGGACAGGACACTAGTCACA
CTGTGACCGACAGTCTGACGCAAATACAACTCCGAAATCCGCGATTACAACATAACACACGGTTTATTCAATCGCTGCAGTAATCGGTTATTATTAGGTA
GATGTTGTTCACCATGCGGACGCAGCGGAAGCCGTCGCCGACGTCGCGGCTCTCGGTCCAGAGCACCGACTCGTCCTGGTAGTCCGGGTTGTAGGGGACC
AGCTTGACGGAGTGGCCCTGCCCCGTGGAGTGCTTGATGGCCTCGCCGGTGACCTTGTTGACGAGGGCGAAGGCCGGGTAGCCCTCCTCGTCCCTGATCC
GGGTGCTGTGCCTCATGTCCTTGATCCAGTGCTGGTACTCGTCCCTGGGGTTGGAGGGCGCCAGGCACACCGTGCCGTTGCGCGCCGTCAGGCTGTAGTC
CTCGCCGGCCTTGCAGAAGACGCGGACGGTGTGGAGTGTGAGCTGTGGTGAATTGTGATGAGGTGCGAG