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Detailed information on CNT30672010


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 9e-61

BLAST vs NONCODE:
NONBRAT002959, E-value = 1e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520352Setaria viridisSetaria italica99.3273.5896.75585forward
CNT30640553Setaria viridisNymphaea colorata32.7723.9888.6193forward
CNT30513316Setaria viridisJuglans regia21.2219.2984.8125forward
CNT30526451Setaria viridisPhaseolus vulgaris23.7713.2193.57140forward
CNT30708177Setaria viridisGlycine max39.0521.8685.22230forward
CNT30290078Setaria viridisTriticum aestivum44.6534.4288.59263forward
CNT30221568Setaria viridisHordeum vulgare51.6129.0488.49304forward
CNT30387274Setaria viridisTriticum turgidum17.4922.9997.09103forward
CNT30562752Setaria viridisActinidia chinensis46.1821.583.82272forward
CNT30236263Setaria viridisBrassica oleracea21.926.5482.95129forward
CNT30554380Setaria viridisOryza glaberrima33.6217.9293.43198forward
CNT30244040Setaria viridisAvena sativa46.1835.1989.34272forward
CNT30262014Setaria viridisBrassica rapa21.928.182.95129forward
CNT30452520Setaria viridisSaccharum spontaneum51.9520.4195.75306forward
CNT30132672Setaria viridisLolium perenne51.6154.4887.5304forward
CNT30229721Setaria viridisAnanas comosus48.912.2788.54288forward
CNT30340460Setaria viridisEragrostis tef51.953694.44306forward
CNT30596509Setaria viridisOryza meridionalis38.3714.8794.25226forward
CNT30370789Setaria viridisOryza glumipatula48.920.9393.06288forward
CNT30328621Setaria viridisAsparagus officinalis18.3436.2487.96108forward
CNT30580745Setaria viridisEchinochloa crusgalli27.556.2596.91162forward
CNT30496270Setaria viridisDigitaria exilis35.4821.1893.78209forward
CNT30116923Setaria viridisOryza nivara46.1832.6991.91272forward

Expression of CNT30672010

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPKTSL*

>peptide 2 (48 aa)
CTSECINSSLVHILQITSPHQQALLINETSINKLSDPSSHHTLSLITK*

>peptide 3 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

Sequence

>CNT30672010
TGTGTACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAA
ACTATCGGATCCATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAG
TTAATTAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGACGCCGGTGAGCCA
CTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAACGCTGGAGGCCGAAGACCTCGCTGTAGGGC
TGGAACGGGGTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGA
ACTGCAGGTACTCCACGGGCTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACCCGTCGAGGTAGTCGGGCGCCACC