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Detailed information on CNT30672008


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 6e-15

BLAST vs NONCODE:
NONORUT000477, E-value = 6e-152

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3067980Setaria viridisLeersia perrieri19.8853.4998.14161reverse complement
CNT30151167Setaria viridisBrachypodium distachyon14.6920.3899.16119reverse complement

Expression of CNT30672008

Peptides detected in this lncRNA

>peptide 1 (57 aa)
HGHEWANTRPSGRTCRLRLRAPADTFRSTFTCEPKSSCRTPSFLISVLAFFIFRRGL*

>peptide 2 (88 aa)
MGMSGRTLGPAGEHAGSGSAHLLTPFEALSRVNRSRLAELLPFSFQSSPFSSSVGAFSLLIRVEVAREQSVPPCHSREDLNSRSRLLS*

Sequence

>CNT30672008
ACATGGGCATGAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTGAA
CCGAAGTCGTCTTGCCGAACTCCTTCCTTTCTCATTTCAGTCCTCGCCTTTTTCATCTTCCGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGAGGTCGCG
AGAGAGCAGAGCGTACCGCCCTGCCATAGTCGCGAGGATCTTAATAGTCGGTCGCGACTGTTGTCATAGTCAACGACGGTTGAAACTTCCAGGAAAAAAC
TTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTC
AAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAAGGGGAAGTGTGATAAGC
TTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAAC
GACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAATGGCTAGACGGTAAGACCCCGTGCACCTTGACT
ATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACACAATGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATG
CCTAACCGCC