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Detailed information on CNT3067197


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550796Leersia perrieriOryza brachyantha71.7852.6878.77669forward

Expression of CNT3067197

Peptides detected in this lncRNA

>peptide 1 (40 aa)
STMRSNTSIRPAVCPHLQKGIGTLRFDTIRHSTMSFDFYL*

>peptide 2 (33 aa)
MQIQSCLQSHNHRHDQLVFVLHVKEVRSWLCWK*

Sequence

>CNT3067197
CTCAACCATGAGGAGTAACACTAGTATAAGACCAGCCGTTTGTCCTCATTTGCAGAAAGGGATCGGAACCCTTCGATTTGATACTATTAGGCATAGCACC
ATGTCGTTTGATTTCTACTTATAGCATCCCAAATTGGTACATTTCTGGTTTGCTCTATCGTTTTTAGGATGCATAGTCTGTGCAATGTGATTTCCGAACT
CAAATCTGAACTCTGAAGGCTGTTGTTTCCAACAAGTGCATTGGTTCAGCAGCGATCGGTGATCTCTGTTTTCACATGTGAGTGATCTTATTTTCTCTTT
TGACAGGAAGCATATGTGGGTGATCATCTGATCTTCTTTTGTTTTGGCAAAGTTTTGTTAAATGGTGTACTAACAAATTCTTGCACAAGCACAAAGTCCA
TGTGTTGTTGATATGCAGCTGTTCACGTTCCACCCGGGGGAAATGAAGACCAATCGGAGAAGTTCTATCTGTTGATGCAATTTAGAATCAACCCAAAATC
TAGAAAGTAGTTCCTGGCTATATGCAAATTCAGAGCTGCTTGCAATCCCACAACCACAGGCATGACCAATTAGTATTTGTTCTCCATGTAAAAGAAGTTA
GGAGCTGGTTATGTTGGAAATGATTCTTCAGTTTCTTCTATTCCACCCTCTTTGATTCATAGGAAAAACATAGAAAATTTAGAGGATTTAAATCCTATAG
AAAAAAAATCCTAAGGAGATGTTTGAAACAGGATTGAATCCTATGCATTCCTTTAAAATTCCTTTGGAATGGACAATCCTATGAAGATTTTGGAGGGAAA
TAATTGAGGTATTCTTATGCCAAAGAGAAGCTAGTGCCGATCTCCAGCCAGAAAACAACACCATCATCAAGAGGACCGAAGATTCTATCCTTATTTTTAT
TTTTAGTATTTTTACCGTGCTTAAGCAGATAC