Detailed information on CNT30671949


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38771|TBA_AVESA, E-value = 9e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30229091Setaria viridisAnanas comosus48.2662.0183.33222forward
CNT3056297Setaria viridisAmborella trichopoda33.748.2983.87155forward

Expression of CNT30671949

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDTWVWNKVGLELSNIHVDSTIKPQGGGKRRYDL*

>peptide 2 (35 aa)
HIIQNGNTHGSSTQWNGTIQSIPNNPTINHQRTTY*

>peptide 3 (44 aa)
MKWIRGYGTRLVWNSVTSTLIAPSNLREVVSEDMICEISLFKLV*

>peptide 4 (82 aa)
METHTAAVRNGMEPYRVYPTTQPLTTSELLINQLLNSLLHRHLRRPRPLRRPPRSPSRARLAYIRHRELLMVGLLGRDYRGI*

Sequence

>CNT30671949
CACATAATACAAAATGGAAACACACACGGCAGCAGTACGCAATGGAATGGAACCATACAGAGTATACCCAACAACCCAACCATTAACCACCAGCGAACTA
CTTATTAACCAGCTACTCAATAGTCTTCTCCATCGTCACCTTCGTCGTCCGCGCCCTCTGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCGCTTGGCGT
ACATCAGGCACAGAGAGCTGCTCATGGTAGGCCTTCTCGGCAGAGATTACAGGGGCATATGATGAAAGCATGAAATGGATACGTGGGTATGGAACAAGGT
TGGTCTGGAACTCAGTAACATCCACGTTGATAGCACCATCAAACCTCAGGGAGGTGGTAAGCGAAGATATGATCTGTGAGATCAGCCTGTTCAAGTTGGT
GTAGGTTGGCCTTTCAATGTCAAGGGACCTCCGGCATATGTCATAGATAGCCTCGTTGTC