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Detailed information on CNT30671914


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 9e-14

BLAST vs NONCODE:
NONORUT002454, E-value = 3e-171

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Setaria viridisOryza sativa28.9210098.54481forward
CNT30524649Setaria viridisSetaria italica82.8641.8199.351378forward
CNT30730480Setaria viridisCorchorus capsularis48.4764.3895.41806reverse complement
CNT30490117Setaria viridisOlea europaea19.9627.1997.29332forward
CNT30505430Setaria viridisNicotiana attenuata48.1734.1395.63801forward
CNT30156864Setaria viridisPistacia vera21.3524.1394.93355reverse complement
CNT30299883Setaria viridisTriticum aestivum58.7546.3998.26977forward
CNT30223648Setaria viridisHordeum vulgare58.7541.1494.68977forward
CNT30385334Setaria viridisTriticum turgidum58.7532.5998.26977forward
CNT30543268Setaria viridisBrassica napus43.9631.8596.31731forward
CNT30234026Setaria viridisBrassica oleracea22.5594.4693.87375reverse complement
CNT30511493Setaria viridisSolanum lycopersicum18.2233.8996.7303reverse complement
CNT30555751Setaria viridisOryza glaberrima26.1661.0197.01435reverse complement
CNT30438073Setaria viridisAegilops tauschii40.8983.5499.26680forward
CNT30258698Setaria viridisAvena sativa25.2651.9898.33420reverse complement
CNT30670388Setaria viridisTriticum dicoccoides58.7534.8497.95977forward
CNT3082633Setaria viridisBrassica juncea1996.0595.57316forward
CNT30207637Setaria viridisHelianthus annuus48.234194.64802forward
CNT30688989Setaria viridisTriticum urartu58.7549.6798.36977forward
CNT30362056Setaria viridisSorghum bicolor23.9996.8492.98399reverse complement
CNT30595568Setaria viridisOryza meridionalis23.0998.9798.96384reverse complement
CNT30359520Setaria viridisLactuca sativa48.1731.4695.26801reverse complement
CNT30434643Setaria viridisPapaver somniferum37.2283.293.05619forward
CNT3057903Setaria viridisAmborella trichopoda41.1928.5992.7685reverse complement
CNT30106724Setaria viridisOryza longistaminata53.0499.2196.94882forward
CNT3038420Setaria viridisCucumis melo29.2834.196.92487forward
CNT30103741Setaria viridisOryza rufipogon31.69100.1995.26527reverse complement
CNT30499372Setaria viridisDigitaria exilis89.4843.7899.41488forward
CNT30603680Setaria viridisOryza punctata89.7237.898.061492forward
CNT30550626Setaria viridisOryza brachyantha18.16103.0791.72302reverse complement

Expression of CNT30671914

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMSMARGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 2 (30 aa)
YVAKYGDDLWLGVKGQPRSDIAGFPRNLFQ*

>peptide 3 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESCFFKCQ*

>peptide 4 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLCRVNRSLRNPRKGCRPMGTRK*

>peptide 5 (97 aa)
MSAKAVALPYTRIRFLAPSRVSTITRSHFLAGADTDRLSKKTLKWANTRPSGRTCRLRLRAPADTFRSTFTCEPKSSCRTPSFLISVLAFFIFRRGL*

>peptide 6 (89 aa)
MIGPRVFKTPLPLALLSLIFTVESSKPSTNSEGLGWPGRPTLLALPKAKLSSLATSKRRAKTFSFEARDECESRCASVHAHTFSCSVAR*

Sequence

>CNT30671914
TATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTAT
GATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAG
TACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGT
GATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCAAAAATGTCTC
AGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACA
AGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCA
ATCTATGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCC
TGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGTTTTTAAAACCCCTCTTCCCCTCGCTCTCCTTTCCTTAATATTCACCGTCGAGTCATCAAAGC
CGTCAACTAATTCAGAGGGGCTCGGCTGGCCTGGTCGCCCTACGCTATTGGCGCTTCCAAAGGCGAAGCTCTCGTCTTTGGCAACCAGCAAACGGAGGGC
TAAAACCTTTAGTTTTGAAGCAAGGGATGAGTGCGAAAGCCGTTGCGCTTCCGTACACGCGCATACGTTTTCTTGCTCCGTCGCGCGTTAGTACAATAAC
GCGCAGCCATTTTCTTGCTGGGGCGGACACGGATCGACTCTCTAAGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGCTCCGG
CTCCGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCGAACTCCTTCCTTTCTCATTTCAGTCCTCGCCTTTTTCA
TCTTCCGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGAGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCGCGAGGATCTTAATAGTCGGTCGC
GACTGTTGTCATAGTCAACGACGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACA
GGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCAAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGAAGTGTGATAAG
CTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAA
CGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGT