Detailed information on CNT30671877


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 1e-41

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520655Setaria viridisSetaria italica937592.47186forward
CNT30180108Setaria viridisSecale cereale9284.0293.48184forward
CNT30221546Setaria viridisHordeum vulgare9280.792.39184forward
CNT30392320Setaria viridisTriticum turgidum898988.76178forward
CNT30658643Setaria viridisTriticum dicoccoides94.542.6694.18189forward
CNT30680880Setaria viridisTriticum urartu94.536.5694.18189forward
CNT30721558Setaria viridisTriticum spelta91.581.789.07183forward
CNT30104991Setaria viridisOryza longistaminata99.583.9790.95199forward
CNT30593977Setaria viridisEragrostis curvula9282.8892.39184forward
CNT30556620Setaria viridisPanicum hallii10020.3394200forward

Expression of CNT30671877

Peptides detected in this lncRNA

>peptide 1 (65 aa)
LPALVVSLAPLPEHDLGAVADAAVPLVAVERVEVEVDVVDHADAAEALADVLALRPQHRRVLVFRV

>peptide 2 (33 aa)
SSAGCLPRTTSRARSRCRRGRRRATCRRGARRS*

>peptide 3 (65 aa)
FQRWLSPSHHFQSTISVPSRTPPCHLSPWSASKLRWMLLTMRMQRKPLPTSLLSVHSTDASSYSGL

Sequence

>CNT30671877
CTTCCAGCGCTGGTTGTCTCCCTCGCACCACTTCCAGAGCACGATCTCGGTGCCGTCGCGGACGCCGCCGTGCCACTTGTCGCCGTGGAGCGCGTCGAAG
TTGAGGTGGATGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCGACGTCCTTGCTCTCCGTCCACAGCACCGACGCGTCCTCGTATTCAGGGTTGT