CANTATAdb - search

Detailed information on CNT30671828

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30526506	Setaria viridis	Phaseolus vulgaris	21.35	9.62	90.35	114	forward

Expression of CNT30671828

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVVWSGSLRWVDSKRVPMMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

>peptide 2 (47 aa)
TSECINSSLVHILQITSPHQQALLINETSINKLSDPSSHHTLSLITK*

Sequence

>CNT30671828
ACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTAT
CGGATCCATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAAT
TAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGA
GGTGGGTGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCACGGG
CTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACCCGTCGAGGTAGTCGGGCGCCACCGCGCCGGGGAACCAGAGCGGCCGGTGGTGG
TGGTGTGTGGCGTGGAGAGGGCTCGTCCCGGGGT