Detailed information on CNT30671777


BLAST search results

BLAST vs Swiss-Prot:
sp|Q651D5|PIP27_ORYSJ, E-value = 6e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221191Setaria viridisHordeum vulgare38.1147.6487.13101forward
CNT30385683Setaria viridisTriticum turgidum31.737.8489.2984forward
CNT30568278Setaria viridisActinidia chinensis31.3216.8487.9583forward
CNT30586754Setaria viridisMusa acuminata87.9286.383.26233forward
CNT30552571Setaria viridisOryza glaberrima31.733.290.4884forward
CNT30254684Setaria viridisAvena sativa33.964088.8990forward
CNT3079298Setaria viridisBrassica juncea22.6414.1288.3360forward
CNT30227873Setaria viridisAnanas comosus50.9421.9584.44135forward
CNT3038888Setaria viridisCucumis melo21.515.5187.7257forward

Expression of CNT30671777

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFTMATPQMAPRHCATMYSTVRNSDSFRPTNSPNVTAGLMCPPGPM

Sequence

>CNT30671777
CGCTCGTACCGGGATGAATGAGTCTCGCGCGGTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAAACGAGGACGAACGTGCCCATGATCTCGGCGCCG
AGGAGGCTGTACTGATCCCCCGTGATGCCCTTCACGATGGCCACGCCGCAGATGGCGCCCAGGCACTGCGCCACGATGTACAGCACGGTGCGCAACAGCG
ACAGCTTCCGCCCCACGAACAGCCCGAACGTCACGGCCGGGTTGATGTGCCCACCTGGTCCCATG