Detailed information on CNT30671730


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 7e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690763Setaria viridisOryza sativa70.0746.689.2398forward
CNT30552254Setaria viridisOryza glaberrima70.0739.9289.2398forward
CNT3010541Setaria viridisZea mays70.0749.7590.45398forward
CNT30574623Setaria viridisOryza barthii70.0739.5689.2398forward

Expression of CNT30671730

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MRQLACSINQSTYAPPGRKTMELQRRMASLVAGDEVGGVGPGVVVDWVGEVVGQVLERALAGDDGLDEESEHGEHGEASGSSARPRGSKLPPG*

>peptide 2 (51 aa)
MAWTKNPNMENMARPQGRRPGRGGRSCRRGRAGRRPRRVGRRQCGSPRRRP*

>peptide 3 (55 aa)
TNIILVYNADSSSRLAPEMQRETRHACGSSLAASTNPRTPLPAGRQWSCRGEWRA*

>peptide 4 (33 aa)
MDKAGVAEVVEAALAEDLGAGLEPDGLAELDAVA

Sequence

>CNT30671730
GCACAAACATCATCTTAGTGTACAACGCCGACTCATCATCTCGACTTGCCCCTGAAATGCAACGTGAAACAAGACACGCATGCGGCAGCTCGCTTGCAGC
ATCAACCAATCCACGTACGCCCCTCCCGGCCGGAAGACAATGGAGTTGCAGAGGCGAATGGCGAGCTTAGTTGCCGGGGACGAAGTTGGTGGCGTAGGCC
CAGGCGTTGTTGTTGACTGGGTCGGCGAGGTGGTCGGCCAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGA
ACATGGCGAGGCCTCAGGGTCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGTGGGCCGCCGGCAATG
CGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCATGGATAAGGCTGGGGTTGCCGAGGTAGTCGAGGC
CGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGG