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Detailed information on CNT30671720


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 9e-40

BLAST vs NONCODE:
NONORUT000045, E-value = 7e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523103Setaria viridisSetaria italica61.4740.8398.55276forward
CNT30303711Setaria viridisTriticum aestivum45.2129.7797.54203forward
CNT30395424Setaria viridisTriticum turgidum41.238.4697.3185forward
CNT30437440Setaria viridisAegilops tauschii59.9152.6492.94269forward
CNT30243491Setaria viridisAvena sativa61.4731.1591.3276forward
CNT30666604Setaria viridisTriticum dicoccoides44.5437.9596.5200forward
CNT30455806Setaria viridisSaccharum spontaneum61.4732.1793.84276forward
CNT30130711Setaria viridisLolium perenne40.0926.4797.78180forward
CNT30684130Setaria viridisTriticum urartu61.2537.9391.27275forward
CNT30722585Setaria viridisTriticum spelta45.2127.6997.54203forward
CNT30363502Setaria viridisSorghum bicolor63.4742.7395.09285forward
CNT30596761Setaria viridisOryza meridionalis43.8824.9494.92197forward
CNT30574682Setaria viridisOryza barthii61.4740.3589.49276forward
CNT30496069Setaria viridisDigitaria exilis61.2534.4693.09275forward
CNT30557628Setaria viridisPanicum hallii64.1451.7192.71288forward

Expression of CNT30671720

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LAQLTQLHTSHPFPFPSNSSDDNIILLPDKL*

>peptide 2 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCLSTLKM*

Sequence

>CNT30671720
CACTAGCACAATTAACCCAACTACATACTAGCCATCCATTTCCATTTCCATCCAACAGTTCTGATGACAATATAATACTGCTACCAGATAAACTGTGAGC
GAGCCAGTACTAGCACCACCACACCCAACCAAACTAGCACTAGCACCACCAAGCACGGCAACCTATCTAAGATGAGGTGATGGTGGGTTTCTTGTTGTAG
CGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGT
GCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTGGCCTTCTTCTTGCCCTTCTTGCCCTCGCCGTCCTTGCCGGCGCT
GGACTTGCCCGCGGGGAGGCGCTTCTCCGCCTTGGGCTTCTTCCCCGCC