Detailed information on CNT30671433


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532104Setaria viridisEucalyptus grandis21.9819.0985.9271reverse complement
CNT30287901Setaria viridisTriticum aestivum34.3741.8992.79111forward
CNT30393905Setaria viridisTriticum turgidum45.8245.5488.51148forward
CNT30689838Setaria viridisTriticum urartu44.2747.9993.71143forward
CNT30362547Setaria viridisSorghum bicolor47.6831.6994.81154forward
CNT30706792Setaria viridisPrunus avium25.086.4983.9581forward

Expression of CNT30671433

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGRDTSNNPELFIPPPFVNANTTPPHLKDTSGKN*

>peptide 2 (63 aa)
MPHEIPATTPTSTLRRPWKTAKRWAEIPPITQNCSFLHHSSMPTPLHLISRIPVAKIERKREMN

Sequence

>CNT30671433
ACGTAGCTGTAAATAAAGCCACCTACTTATAACTTAACAGACAATTGGTGGCAGGGGCACTTTCGTATTCTCAAAAACATGACTCGGGGTATTTTTCTGT
TTCTACAATCCCCCACGTTCCTAGCAGTTGATGCCACATGAGATACCAGCAACAACACCGACCAGCACCTTGAGAAGACCCTGGAAGACGGCGAAAAGAT
GGGCAGAGATACCTCCAATAACCCAGAATTGTTCATTCCTCCACCATTCGTCAATGCCAACACCACTCCACCTCATCTCAAGGATACCAGTGGCAAAAAT
TGAAAGAAAGAGAGAGATGAACC