Detailed information on CNT30671345


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 1e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 6e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712072Setaria viridisGlycine max24.742.2795.9268reverse complement
CNT30637481Setaria viridisCapsicum annuum26.6464.5197.23289reverse complement
CNT30508923Setaria viridisSolanum lycopersicum27.7490.1298.34301reverse complement
CNT30258490Setaria viridisAvena sativa33.7350.6999.73366reverse complement
CNT30202530Setaria viridisHelianthus annuus5378.4497.91575reverse complement
CNT30718256Setaria viridisMalus domestica golden23.8784.6488.8259reverse complement
CNT30369921Setaria viridisOryza glumipatula20.9298.7100227reverse complement
CNT30484250Setaria viridisChara braunii17.4226.0394.71189forward
CNT30320583Setaria viridisAsparagus officinalis24.6124.34100267reverse complement
CNT30118993Setaria viridisCitrus clementina25.1677.5694.14273reverse complement

Expression of CNT30671345

Peptides detected in this lncRNA

>peptide 1 (59 aa)
LVRDRFTPRGAYTSRLSKFCSKTSYENLYREGFPAAQQFFHTNLAARRCYWHNNRYTIG*

>peptide 2 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNQRLSLPSHTSVTL*

>peptide 3 (29 aa)
FSTRSLHTSRCLHLSPIEVLFKNLVRELV*

Sequence

>CNT30671345
GTTTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAAACCTCGTACGAGAACTTGTATAGAGAAGGATT
TCCCGCGGCGCAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAACCCAGTCCTCTCG
TACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCA
TCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGT
CATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGAC
CAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCAACGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCA
TCCGCCCCAGATAAACTACCCACCTCGCAGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACAC
ATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCAC
CGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTAC
TGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATCACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCG
GCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCTTAGAGAGTCGATCCGTGTCCGCCCCAGCAAGAAAACGG