Detailed information on CNT30671344


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EU94|PIP11_ORYSJ, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30385796Setaria viridisTriticum turgidum27.1638.9390.62160forward
CNT30658043Setaria viridisTriticum dicoccoides27.1658.3990160forward
CNT30461535Setaria viridisSaccharum spontaneum26.9931.6799.37159forward
CNT30131630Setaria viridisLolium perenne26.9959.3391.19159forward
CNT30340874Setaria viridisEragrostis tef10.723.3390.4863reverse complement
CNT30495761Setaria viridisDigitaria exilis27.3341.0795.65161forward

Expression of CNT30671344

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MALMITCAKIIPPKDQAMPWMPTVAHLELDLETPMTVRMVM*

>peptide 2 (66 aa)
HDRKANKSSVQKYTGSGFRLTEQRSSREERRRIDRDTRRGHTRHQRGRRSFFSSGWHVSACGAVAA*

Sequence

>CNT30671344
CCACGATAGAAAAGCAAACAAGAGCTCGGTACAGAAATACACAGGTTCTGGGTTCAGATTAACAGAACAGCGCAGCAGTCGTGAAGAGAGGCGACGAATC
GACAGAGATACTAGGCGTGGGCACACAAGACATCAGAGAGGAAGACGCTCGTTCTTTTCTTCGGGCTGGCATGTCTCGGCGTGCGGGGCCGTCGCAGCTT
AAGACCTGCTCTTGAACGGGATGGCCCTGATGATCACCTGCGCGAAGATCATTCCTCCGAAGGACCAGGCGATGCCCTGGATGCCGACGGTGGCGCACTT
GGAGTTGGACTTGGAGACGCCCATGACGGTGAGGATGGTGATGTAGAGGAAGAGGAAGGACCAGGACTTGAGCTCCCCGGGCTCGAACAGCGGCGCCGGC
GGGGGCTCCTTGTAGTCCTTGTCGTCCCCGGCGCCCTGCGCCGCCGTCCCGATGGGCTGCCTCTCCGAGAACTTGTTGGCGCCCAGGCGCACGTCCTCCT
CCTTCCCCTCCATCTGATCTCTCTCCTCTCTCTCTCTTCCCTTGCGCGTTTGGCCTCGTTGGTTTCTTGAAGCAGCGGTGTGTGTCTGT