Detailed information on CNT30671311


BLAST search results

BLAST vs Swiss-Prot:
sp|P38562|GLNA4_MAIZE, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691310Setaria viridisOryza sativa40.1438.7890.35114forward
CNT30296689Setaria viridisTriticum aestivum5026.9487.32142forward
CNT30225888Setaria viridisHordeum vulgare35.2119.3194100forward
CNT30552642Setaria viridisOryza glaberrima40.1417.8190.35114forward
CNT30250445Setaria viridisAvena sativa49.6525.8288.65141forward
CNT301731Setaria viridisZea mays42.9621.0786.07122forward
CNT30351207Setaria viridisEragrostis tef27.1111.8190.9177forward
CNT30364825Setaria viridisSorghum bicolor43.3147.1392.68123forward
CNT30369665Setaria viridisOryza glumipatula54.5824.5392.9155forward
CNT30575246Setaria viridisOryza barthii54.5827.8892.9155forward
CNT30115740Setaria viridisOryza nivara40.143090.35114forward
CNT3040612Setaria viridisMarchantia polymorpha40.4911.7385.22115forward

Expression of CNT30671311

Peptides detected in this lncRNA

>peptide 1 (93 aa)
VVVAAIAIRNGTERNRLANAVPSSMQSPEAAAMAAAEPADTSGLPDDGGLGDHGGVDVGRLVLAGQPALVALTVGGDVLLVPQLQLLDSGLDHL

>peptide 2 (64 aa)
MERNGIVWQMLCPAQCNRRRQQPWPPPNQQILQGFQMMVVSAIMEVLMSAVSCLPVSRRSLPSP*

>peptide 3 (45 aa)
SSSSYSHTEWNGTESFGKCCAQLNAIAGGSSHGRRRTSRYFRASR*

Sequence

>CNT30671311
GTAGTAGTAGCAGCTATAGCCATACGGAATGGAACGGAACGGAATCGTTTGGCAAATGCTGTGCCCAGCTCAATGCAATCGCCGGAGGCAGCAGCCATGG
CCGCCGCCGAACCAGCAGATACTTCAGGGCTTCCAGATGATGGTGGTCTCGGCGATCATGGAGGTGTTGATGTCGGCCGTCTCGTGCTTGCCGGTCAGCC
GGCGCTCGTTGCCCTCACCGTAGGCGGCGATGTGCTCCTTGTGCCGCAGCTTCAGCTTCTCGATAGCGGCCTTGATCACCTCGT