« Back to Setaria viridis search


Detailed information on CNT30671259


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-54

BLAST vs NONCODE:
NONGMAT001327, E-value = 1e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523218Setaria viridisSetaria italica60.8845.698.8249forward
CNT30317753Setaria viridisCorylus avellana55.2632.4782.3226forward
CNT30617135Setaria viridisSesamum indicum61.6125.1284.92252forward
CNT3069058Setaria viridisQuercus suber40.8319.0983.83167forward
CNT3042757Setaria viridisPrunus dulcis56.9738.4583.26233forward
CNT30178072Setaria viridisSecale cereale61.6146.4994.84252forward
CNT30286550Setaria viridisTriticum aestivum61.6141.7296.83252forward
CNT30219776Setaria viridisHordeum vulgare58.9257.2495.85241forward
CNT30386576Setaria viridisTriticum turgidum62.143.3496.06254forward
CNT30436398Setaria viridisAegilops tauschii61.6150.9197.62252forward
CNT30244338Setaria viridisAvena sativa62.145.7796.06254forward
CNT30656490Setaria viridisTriticum dicoccoides62.141.195.67254forward
CNT3059678Setaria viridisArabidopsis lyrata39.3633.4783.23161forward
CNT30444399Setaria viridisSaccharum spontaneum63.3343.4697.3259forward
CNT30135649Setaria viridisLolium perenne62.149.5194.09254forward
CNT30679384Setaria viridisTriticum urartu61.6141.5895.24252forward
CNT30348363Setaria viridisEragrostis tef61.6145.2498.41252forward
CNT30357929Setaria viridisLactuca sativa60.6455.3680.24248forward
CNT30370989Setaria viridisOryza glumipatula57.9537.9298.31237forward
CNT30645456Setaria viridisCannabis sativa47.4325.2986.08194forward
CNT30331117Setaria viridisDioscorea rotundata39.361781.37161forward
CNT30147953Setaria viridisBrachypodium distachyon62.5929.4694.92256forward
CNT30101647Setaria viridisOryza rufipogon58.1925.5497.48238forward
CNT30496126Setaria viridisDigitaria exilis62.137.3594.88254forward

Expression of CNT30671259

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LHRQRKSTAQGTQRNKAPPSTAADEVGDALSRRIRRGCGPDA*

>peptide 2 (35 aa)
STSPEEKHSTGNTKEQSTTINSCRRGRGRAQPPNP*

>peptide 3 (52 aa)
MSPEMRFTPPLLASLRIAGFVMPWMLSRSTFRRKTQLLGEIWWRIRIRRCGWC

Sequence

>CNT30671259
CTCTACATCGCCAGAGGAAAAGCACAGCACAGGGAACACAAAGGAACAAAGCACCACCATCAACAGCTGCAGACGAGGTAGGGGACGCGCTCAGCCGCCG
AATCCGTAGAGGGTGCGGCCCTGACGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCCGTGTAGGTGACGGCGTCGC
GGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGCCTCCGGAT
CGCCGGCTTCGTGATGCCCTGGATGTTGTCGCGGAGCACCTTCCGGAGGAAGACTCAGCTGCTAGGAGAGATTTGGTGGAGGATTCGAATTCGCCGCTGT
GGCTGGTGC