Detailed information on CNT30671254


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513690Setaria viridisJuglans regia28.822.9187.9583reverse complement
CNT30314095Setaria viridisCamelina sativa26.395.0796.0576forward
CNT30726123Setaria viridisLupinus angustifolius32.992.8695.7995reverse complement
CNT3040451Setaria viridisMarchantia polymorpha50.3524.792.41145reverse complement

Expression of CNT30671254

Peptides detected in this lncRNA

>peptide 1 (32 aa)
NKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

>peptide 2 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 3 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

Sequence

>CNT30671254
CAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA
CGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCAGAGAACAAT
CCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGGCCCAGCCC