CANTATAdb - search

Detailed information on CNT30671197

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30519803	Setaria viridis	Setaria italica	97.03	66.2	99.68	621	forward

Expression of CNT30671197

Peptides detected in this lncRNA

>peptide 1 (31 aa)
CHHLTVLFDLSEFIQQQKFGQGLAASGTSLL*

Sequence

>CNT30671197
TGTCATCATTTAACCGTTTTGTTTGACCTTTCAGAATTTATTCAACAACAAAAATTTGGTCAAGGATTGGCTGCTTCAGGCACATCCTTGTTGTGAATTG
GGATTTGACATTTGCTACAGCACTTTCTAAGTTCACACCATGGTGATAGTGTACATTGGTACGGCTGATTTCCATGTGAGAAACGACAGAATTTGAACGG
AGGAGGCACAATTCTGAAGGACGAATTTCACAGATTACCACAATATAATTCAAAGCATCCATTGATGTAGCGATTGGCATGGTTGGAGAAGGGCAAGTGG
ATTGCAGGAAGATTCTTGCTGAATGCTGACCGAAGCTTTTAGTTTCTAGCCAACTACATAATTCAAGGTCCAAGGCTGTGGTTGACGCACGTGTTTACAA
AACTGCAATTTTCCGTTGCGTCGACACACTGCAGACAACGACTTGCATGATAGCAAGTGATCTTCAGAGTACAAGTGTACGTCGGACTCAACTAGTGATT
GCAGGCCGGCTTGTGTTTTGGACTCGGTAAATATCTCCGGAACATACATTTTCTTTCTTTCTTTTGTAAAGCTCCTTTTATTGTGGCCAATTGAATTTGT
AAGTCTTGTGCAATTACGGTGGACATATAAAGATCCTTTT