CANTATAdb - search

Detailed information on CNT30671156

BLAST search results

BLAST vs Swiss-Prot:
sp|Q94HW2|POLR1_ARATH, E-value = 9e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30443963	Setaria viridis	Aegilops tauschii	24.63	10.03	82.24	214	reverse complement
CNT30369689	Setaria viridis	Oryza glumipatula	30.03	20.34	82.38	261	forward
CNT30109053	Setaria viridis	Oryza longistaminata	30.26	16.19	82.89	263	forward
CNT30101709	Setaria viridis	Oryza rufipogon	30.03	20.63	81.61	261	forward
CNT30117499	Setaria viridis	Oryza nivara	23.71	57.54	81.55	206	forward

Expression of CNT30671156

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYFFFLSEQLGRPLLVFFIIWCKKYIQVTRP*

>peptide 2 (37 aa)
MQLARATLSVLIDRVDVLFFFKRTAGEAPTGIFHYMV*

>peptide 3 (50 aa)
MRPNSSLKINFRLPRDNGVGPIDHFLINHSHKGVFRVHIGQQWVDGLEAK*

>peptide 4 (51 aa)
MKWYFTMMCLLRSWKTGFFARARANLLSTLSSTASASLPKRSPSSRASQRA*

Sequence

>CNT30671156
CCTTTTCATCGGTATTGTAAAATGTTTGCATGTAAAACTACGAGCCTTTTATGCAGTTAGCAAGAGCAACACTGTCAGTTTTGATTGATAGAGTAGATGT
ACTTTTTTTTTTTAAGCGAACAGCTGGGGAGGCCCCTACTGGTATTTTTCATTATATGGTGTAAAAAATATATACAGGTTACAAGGCCTTAGGCCCAAAG
AGAAAAGGAGAAAGAAATCATTTATCGGAAATTACAAAACCAGGATTCCAACTCCATTTTCAGGGATGGTTTGGCCCTATGCAAGATGAGACCAAATTCT
TCTCTGAAAATCAACTTCCGTCTCCCTAGGGATAATGGTGTTGGCCCAATAGATCACTTTCTCATTAACCACTCCCACAAAGGGGTCTTTAGGGTACATA
TAGGCCAACAATGGGTAGATGGCTTAGAAGCTAAGTAAAGCATCTAAAGAGCATCTAAGTAGATAAAGTGCATATAGGCATATAGATAGATAAATAGCAC
ACACATGACTTAGTCTATCAATCTCCCCCTAAGTCTTGCGTGTCTTGAGCGGCAATTGGACCATCCTAATCCTAGAGCAAAGTTCCTGAAACTTGATCCT
TCCAAGGGACTTGGTAAGAAGGTCGGCGAGTTGATCCTTGGTGTTGATGTAGTTCGCCCTGACACTCCCTTCCTCCAAGCAACCTCGGATGAAGTGGTAC
TTCACTATGATGTGCTTGCTTCGCTCGTGGAAGACGGGATTCTTTGCCAGAGCCAGAGCGAACTTGCTGTCCACCCTGAGCTCCACTGCTTCAGCGTCCT
TGCCAAAAAGATCACCGAGCAGCCGAGCGAGCCAGAGAGCCTGAGTCGAAACGGAAGAAGCAGCGATGT