CANTATAdb - search

Detailed information on CNT30671131

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30139143	Setaria viridis	Lolium perenne	38.91	41.44	85.54	242	forward
CNT30150378	Setaria viridis	Brachypodium distachyon	39.07	46.02	83.54	243	forward
CNT30495633	Setaria viridis	Digitaria exilis	48.55	57.41	93.71	302	forward
CNT30115985	Setaria viridis	Oryza nivara	18.33	24	89.47	114	forward

Expression of CNT30671131

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPPSRIVKILFGDRSLHPKRMLEESSLYMNYYFWI*

>peptide 2 (50 aa)
MQDQRRWKSTMKFLPPFSAGALAKSGEDDTAGTLMPPLTDIEGPQRLWVM*

Sequence

>CNT30671131
GACTGATAAAAGTTGGGCAGACTCGACTCAACCTATGACGACAAATGTTTCCGGGGACCGATGCCACCGTCTAGGATAGTTAAGATACTGTTTGGAGATC
GAAGCCTCCACCCAAAACGAATGTTGGAAGAATCCTCCCTCTACATGAATTATTACTTTTGGATATGAAAGGCAAAAACTTCACCAGATCCTGATTGGGC
AGGACCGGGAACAAACTGCTCTTGTTCGTCATCATTTTTCTTCATTTAAGCACCGCCCGAGCCGTACTTCTTCCCGAAGAAGAGGATCTGAAGCTGGTCA
TAGCCAGAAAGCACACCAGCACCAGCAATGGCATCCATGGAGCTCTTGTACTTGACAGCCTCACCAGACGTCATCATCATCCTTCTGCGGACAGTGTCAA
TGGGGTAAGATGCAAGACCAGCGCCGTTGGAAATCAACCATGAAGTTTTTGCCTCCTTTCTCAGCTGGAGCATTAGCAAAAAGCGGAGAGGATGACACCG
CTGGGACATTGATGCCACCACTGACAGACATTGAAGGGCCCCAAAGGCTCTGGGTCATGTAGTTCCTTGTGGGAAATCTCCTCTCATAAGACGAGACAGA
AGGGCAGATGTTACGGGCCCGT