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Detailed information on CNT30670998


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 4e-95

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519947Setaria viridisSetaria italica97.4474.0893.5646forward
CNT30460404Setaria viridisSaccharum spontaneum68.9314.4490.59457forward
CNT30583697Setaria viridisEchinochloa crusgalli68.9324.8292.12457forward

Expression of CNT30670998

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGMPSLSWILAFTLSMVSELSTSKVMVLPVKVFTKICMPPLRRRTRWRVLSFWML*

>peptide 2 (58 aa)
HRFKFKHHLFMVIPYCSTATTVSGKHRHNQRQLHKHHRYFKDDTLHGRDQTTQEQQLR*

>peptide 3 (62 aa)
TDLSSNITYSWLYHTAPPQQLFQVNTDTTRDNYTNTTDTSKTTPFMAETRQPRNSSSDDRIV*

>peptide 4 (35 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICI

Sequence

>CNT30670998
GCACAGATTTAAGTTCAAACATCACTTATTCATGGTTATACCATACTGCTCCACCGCAACAACTGTTTCAGGTAAACACAGACACAACCAGAGACAACTA
CACAAACACCACAGATACTTCAAAGACGACACCCTTCATGGCAGAGACCAGACAACCCAGGAACAGCAGCTCCGATGACCGAATAGTTTAGTGCCCAGTT
TAGTGCCCACCGCGGAGACGAAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAATCAGCTAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAA
AGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGAACTCTCAACCTCCAAAGTGATGGT
CTTGCCAGTCAAGGTCTTCACGAAGATCTGCATGCCTCCCCTGAGACGGAGAACCAGGTGGAGGGTGCTCTCCTTTTGGATGTTATAATCAGCGAGAGTG
CGCCCATCCTCAAGCTGCTTGCCCGCGAAGATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGT
CAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATCT