CANTATAdb - search

Detailed information on CNT30670969

BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 7e-131

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30641383	Setaria viridis	Nymphaea colorata	89.04	32.52	96.85	1016	reverse complement
CNT30550219	Setaria viridis	Ipomoea triloba	89.04	23.4	99.02	1016	reverse complement
CNT30702366	Setaria viridis	Quercus lobata	87.29	100	98.49	996	forward
CNT30618996	Setaria viridis	Sesamum indicum	68.71	16.49	97.19	784	reverse complement
CNT30283003	Setaria viridis	Chenopodium quinoa	52.76	63.04	98.01	602	forward
CNT3020470	Setaria viridis	Citrullus lanatus	29.62	62.71	98.52	338	forward
CNT30632407	Setaria viridis	Vigna unguiculata	88.87	37.54	98.52	1014	forward
CNT30504586	Setaria viridis	Nicotiana attenuata	88.87	57.58	98.03	1014	reverse complement
CNT30185187	Setaria viridis	Secale cereale	89.04	28.72	99.7	1016	reverse complement
CNT30299053	Setaria viridis	Triticum aestivum	89.04	28.36	99.31	1016	reverse complement
CNT30221833	Setaria viridis	Hordeum vulgare	80.54	67.33	97.93	919	reverse complement
CNT30394721	Setaria viridis	Triticum turgidum	89.04	27.74	99.61	1016	reverse complement
CNT30569655	Setaria viridis	Actinidia chinensis	89.31	28.62	97.74	1019	reverse complement
CNT30543278	Setaria viridis	Brassica napus	69.06	29.19	96.45	788	reverse complement
CNT30147396	Setaria viridis	Medicago truncatula	89.04	34.15	98.13	1016	reverse complement
CNT30438197	Setaria viridis	Aegilops tauschii	89.04	97.04	99.8	1016	reverse complement
CNT30660235	Setaria viridis	Triticum dicoccoides	66.35	80.45	98.81	757	forward
CNT30140161	Setaria viridis	Lolium perenne	89.04	29.85	100	1016	reverse complement
CNT3017954	Setaria viridis	Zea mays	89.66	27	99.02	1023	reverse complement
CNT30605146	Setaria viridis	Gossypium raimondii	66.43	49.64	98.02	758	forward
CNT30216563	Setaria viridis	Kalanchoe fedtschenkoi	89.04	26.12	98.92	1016	reverse complement
CNT3067934	Setaria viridis	Leersia perrieri	19.63	98.25	95.98	224	forward
CNT30655407	Setaria viridis	Rosa chinensis	89.13	30.42	98.03	1017	reverse complement
CNT30628241	Setaria viridis	Daucus carota	89.04	37.63	99.02	1016	forward
CNT30682011	Setaria viridis	Triticum urartu	85.28	99.79	99.69	973	reverse complement
CNT30721631	Setaria viridis	Triticum spelta	89.04	29.25	99.7	1016	reverse complement
CNT30429739	Setaria viridis	Papaver somniferum	89.13	31.61	94.4	1017	reverse complement
CNT30571858	Setaria viridis	Vitis vinifera	89.04	29.31	98.92	1016	forward
CNT30644906	Setaria viridis	Cannabis sativa	18.14	64.69	90.82	207	forward
CNT3056076	Setaria viridis	Amborella trichopoda	79.32	39.31	92.93	905	reverse complement
CNT3038324	Setaria viridis	Cucumis melo	89.13	53.92	98.03	1017	forward
CNT30557400	Setaria viridis	Panicum hallii	55.83	46.43	97.96	637	reverse complement

Expression of CNT30670969

Peptides detected in this lncRNA

>peptide 1 (59 aa)
LVRDRFTPRGAYTSRLSKFCSKTSYENLYREGFPAAQQFFHTNLAARRCYWHNNRYTIG*

>peptide 2 (29 aa)
FSTRSLHTSRCLHLSPIEVLFKNLVRELV*

>peptide 3 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNQRLSLPSHTSVTL*

Sequence

>CNT30670969
GTTTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAAACCTCGTACGAGAACTTGTATAGAGAAGGATT
TCCCGCGGCGCAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAACCCAGTCCTCTCG
TACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCA
TCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGT
CATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGAC
CAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCAACGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCA
TCCGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGAT
TGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTGCACGGGGTCTTACCGTCTAGCC
GTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC
GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATCACACTTCTCCTTCCGACCTTCCAGC
ACCGGGCAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCTTAGAGAGTCGATCCG
TGTCCGCCCCAGCAAGAAAACGGCTGCGCGTTATTGTACTA