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Detailed information on CNT30670953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Setaria viridisOryza sativa37.0510.92100342forward
CNT30550263Setaria viridisIpomoea triloba37.052.9698.54342reverse complement
CNT30637323Setaria viridisCapsicum annuum34.1322.3193.33315reverse complement
CNT3098505Setaria viridisSolanum tuberosum37.0534.8695.91342forward
CNT30309155Setaria viridisTriticum aestivum37.0515.4399.71342forward
CNT30221574Setaria viridisHordeum vulgare20.1516.1299.46186forward
CNT30400948Setaria viridisTriticum turgidum37.0513.68100342forward
CNT30585815Setaria viridisMusa acuminata37.0514.0994.44342reverse complement
CNT30147387Setaria viridisMedicago truncatula36.6250.698.82338forward
CNT30435015Setaria viridisAegilops tauschii37.0530.35100342forward
CNT30249262Setaria viridisAvena sativa23.517.9194.01217forward
CNT30662061Setaria viridisTriticum dicoccoides36.417.5199.7336forward
CNT30139202Setaria viridisLolium perenne37.0513.499.71342forward
CNT3018235Setaria viridisZea mays31.5315.0399.66291reverse complement
CNT30655385Setaria viridisRosa chinensis37.0514.5298.25342reverse complement
CNT30210912Setaria viridisHelianthus annuus37.0516.0598.25342reverse complement
CNT30360998Setaria viridisLactuca sativa31.4210098.97290reverse complement
CNT30369805Setaria viridisOryza glumipatula35.5422.8798.78328reverse complement
CNT30484721Setaria viridisChara braunii25.3518.6884.19234forward
CNT30575706Setaria viridisOryza barthii37.0514.0397.95342reverse complement
CNT30581589Setaria viridisEchinochloa crusgalli36.434.43100336forward
CNT30116696Setaria viridisOryza nivara36.518.5100337forward

Expression of CNT30670953

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 2 (38 aa)
FPYGYLVTTSPQSKTPPWYAPIRPPKAFVALVVHRSHG*

>peptide 3 (46 aa)
MPGRGDGKRNCSEERYWGSQCFSTPNEMRQPRDALLLTPRRFRDGA*

>peptide 4 (53 aa)
VPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

>peptide 5 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 6 (31 aa)
MGRPTTSLFHFHLGPGQVSGGPCRAPSPPKQT

>peptide 7 (30 aa)
MNIVRCCSSRIPAYPRLGWVGPPLHFFTFT*

Sequence

>CNT30670953
GGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGT
ACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCG
CGGCATGCTGATCCGCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTT
ACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGGAGAAGTCAGTTGATTCTTCCGAAGAACCGGAAGCGAAGCGCTATGCCGGGGCGAGGG
GACGGGAAAAGAAACTGCTCCGAAGAAAGATATTGGGGTTCCCAATGCTTCTCCACGCCCAACGAGATGCGCCAACCTCGGGATGCTTTACTCCTAACCC
CACGACGGTTCCGAGACGGAGCTTAACCTGAGTCTCGGTTAAGAACGGCGATGATCTACGTTTCACACGGCGCACGATTCCATGGATAGTTTCATTCGAG
ATCGTGATGGAGGACATAGCTTACGATCATCGGCTTTGATCATGCCACTAGGCATTTGATTAGGACATTGCACAATGATCCGAACACTTTGTCGCATCTC
TTCGATACGAATACAGTAACGATCATAGCGATCTCCTCTGGTACCTACTGGTACGTCAAGATCCGATTGGTCATGAACATCGTAAGGTGCTGCTCTTCGC
GAATCCCAGCATACCCCAGGTTGGGATGGGTAGGCCCACCACTTCACTTTTTCACTTTCACTTAGGCCCGGGCCAAGTCAGTGGGGGACCCTGTCGGGCT
CCTTCCCCCCCAAAACAAACTGT