Detailed information on CNT30670787


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529934Setaria viridisEucalyptus grandis37.0133.8185.11141forward
CNT30517189Setaria viridisJuglans regia25.7225.1985.7198forward
CNT30151326Setaria viridisBrachypodium distachyon35.173391.79134forward
CNT30104292Setaria viridisOryza rufipogon33.622.1889.84128forward

Expression of CNT30670787

Peptides detected in this lncRNA

>peptide 1 (37 aa)
IVSGNARPLHPTTNYAIILPQKQTALPSSSHSTRLKR*

>peptide 2 (45 aa)
SFWQRTPASPHDQLRHYSSAKANSSSLLFPLNQAQAMTLLRQRRI*

Sequence

>CNT30670787
ATAGTTTCTGGCAACGCACGCCCGCTTCACCCCACGACCAATTACGCCATTATTCTTCCGCAAAAGCAAACAGCTCTTCCCTCCTCTTCCCACTCAACCA
GGCTCAAGCGATGACCCTCCTACGCCAACGGCGCATTTGATATCCATGCAAAAGTTAATTGACAAGCCGGTGTAGCGAACTTCATACCGGCACACAACAC
AACCGGCCGAGTGAACTTCTTGTCGTGCTGCCTAGTACCGGTAGTGAGCAGGCTTGTAGGGACCCTCAATCGGGACACTGATGTAGTCAGCCTGAGACTT
GCTGAGCTTGGTGAGCCTGGCACCAAGCTTGCCCAAGTGGAGAGCAGCAACCTTCTCATCAAGGTCCTTGACCTTGTACTC