Detailed information on CNT30670750


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552732Setaria viridisOryza glaberrima23.4816.0493.5177forward
CNT30595781Setaria viridisOryza meridionalis23.4815.9193.5177forward
CNT30100262Setaria viridisOryza rufipogon23.4816.8993.5177forward
CNT30115946Setaria viridisOryza nivara23.4813.4693.5177forward
CNT30550530Setaria viridisOryza brachyantha24.0910.9496.279forward

Expression of CNT30670750

Peptides detected in this lncRNA

>peptide 1 (37 aa)
TAQNVYIQPKRGRQERKTCAGTSMCAIKESCCNLVNL*

>peptide 2 (33 aa)
RHKTCTSSPKGAGRNGKRVQELVCVQSKNLAAT*

>peptide 3 (43 aa)
MSFRNFSMCSACSEMATDRLPKQPALGGGAVVLRYILVLALGGE

Sequence

>CNT30670750
ACGGCACAAAACGTGTACATCCAGCCCAAAAGGGGCAGGCAGGAACGGAAAACGTGTGCAGGAACTAGTATGTGTGCAATCAAAGAATCTTGCTGCAACC
TAGTAAACTTGTAAGATCACCCTCCTGTTTCGATTCTGCTGCTCCTGCGCTTACTGATGGATGGCTCGTGTGTGAAGGAGATCAGAAGTCGTAGATGAGC
TTCCGGAACTTCTCCATGTGCTCGGCCTGCAGCGAGATGGCCACGGACAGGCTGCCCAAGCAGCCGGCGTTAGGTGGTGGTGCGGTGGTGTTACGGTATA
TTCTGGTATTAGCTCTTGGTGGAGAGCT