CANTATAdb - search

Detailed information on CNT30670745

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT002096, E-value = 4e-29

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30629386	Setaria viridis	Vigna unguiculata	22.05	54.26	92.86	140	forward
CNT30721961	Setaria viridis	Triticum spelta	30.08	64.53	90.58	191	forward
CNT30364844	Setaria viridis	Sorghum bicolor	37.95	55.28	94.19	241	forward
CNT30595814	Setaria viridis	Oryza meridionalis	31.34	59.23	90.45	199	forward

Expression of CNT30670745

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MAVNCSLTRRNISWIEVELPMNVDAIFRPLGGMSHTLDFTLFGIHSTK*

Sequence

>CNT30670745
ACTAAAATATAGAATCCAGCTACTATCAAATTACACTTGCATGATCTAATAGTAATTAGGTCCACAGTTAAAACTAATCTCACAGTTTTGCAGCAGCAGC
ATCAAACCCATCAACACAAGCAATCTAAAGGCACCGCAACTCCACAAGCACCAAGATTAACAGCAACAATAATAGCAACACAATCCAACATGGCCCCCGG
GCCGGTGGCTTAGGCAGCCACGTCCTCTTCCTCCTCGTCCTCGTAGTCTTCCTCCTCGTCAGCTGTCGCGTCCTGGTACTGCTGGTACTCAGCCACCAGT
GCAAGAAGGCCTTGCGCCGGAACATGGCCGTGAACTGCTCGCTCACGCGGCGGAACATCTCCTGGATCGAGGTGGAGTTGCCGATGAACGTGGACGCCAT
CTTCAGGCCTCTGGGGGGGATGTCGCACACGCTCGACTTCACGTTGTTCGGGATCCACTCCACGAAGTAGGACGAGTTCTTGTTCTGCACGTTCAGCATC
TGCTCGTCCACCTCCTTGGTGCTCATCTTCCCACGGAACATGGCCGAGGCTGTCAGGTAGCGCCCATGACGTGGGTGTAGCAAGTTTCAGAGTGCGGAAG
CAGATGTCGTAAAGAGCTTCATTGTCAAGGACCAT